Jalapeño Popper Macaroni and Cheese is a fun twist on a classic comfort dish, mixing creamy, cheesy macaroni with the spicy kick of jalapeños and the rich, buttery flavor of cream cheese. It’s like your favorite jalapeño poppers turned into a cozy bowl of happiness, with a little crunch from a crispy topping to keep things interesting.
I love making this dish when I want something that’s both comforting and a bit exciting. The heat from the jalapeños wakes up your taste buds just enough without overpowering the cheesy goodness. When I make it, I usually add extra jalapeños on top for that bonus spicy crunch, and it never fails to get everyone asking for seconds.
This mac and cheese is perfect for sharing at family dinners or casual get-togethers with friends. I like serving it alongside a fresh salad to balance out the richness, but honestly, it’s so flavorful on its own that it feels like a main event. If you ever want a dish that’s creamy, cheesy, a little spicy, and totally cozy, this recipe is a winner every time.
Key Ingredients & Substitutions
Jalapeños: Fresh jalapeños give this dish its signature spicy kick. Remove the seeds to tone down the heat if you prefer it milder. For no heat, you could swap with green bell peppers, but the flavor will be less bold.
Cheeses: Sharp cheddar and Monterey Jack create the creamy, melty base. Sharp cheddar adds a nice tang, while Monterey Jack keeps it smooth. You can try Colby or mozzarella if needed, but the dish won’t be quite as rich.
Cream Cheese: This is what makes the mac and cheese extra creamy and popper-like. If you don’t have cream cheese, mascarpone can work as a substitute for a similarly smooth texture.
Panko Breadcrumbs: They provide a crunchy topping. If you don’t have panko, regular breadcrumbs work, but they’re less crispy. You can add crushed crackers or cornflakes for extra crunch.
Bacon (optional): Bacon adds a smoky, savory touch that pairs well with the spicy jalapeños. For a vegetarian option, leave it out or use smoked paprika for some smoky flavor.
How Do You Make a Smooth and Creamy Cheese Sauce?
The cheese sauce is the heart of this dish, and getting it smooth is key. It starts with making a roux (butter + flour) to thicken the sauce:
- Cook the flour and butter for a minute or two to remove the raw taste but don’t let it brown too much.
- Slowly whisk in cold milk to avoid lumps and keep stirring until it thickens.
- Lower the heat and add cream cheese first to melt it gently without clumping.
- Finally, stir in shredded cheeses off the heat or on low to prevent the sauce from breaking or getting grainy.
Remember to stir often and keep the heat moderate. This slow process ensures a silky, cheesy sauce that coats your pasta perfectly.

Equipment You’ll Need
- Large pot – to boil the macaroni until just tender.
- Whisk – perfect for making a smooth cheese sauce without lumps.
- Large saucepan – to cook the roux and melt the cheese sauce evenly.
- Cast-iron skillet or baking dish – for baking the mac and cheese until bubbly with a crispy top.
- Measuring cups and spoons – to get the right amounts of ingredients every time.
Flavor Variations & Add-Ins
- Add cooked shredded chicken for extra protein and a heartier meal.
- Mix in diced cooked bacon or pancetta for a smoky, savory boost.
- Use smoked gouda or pepper jack cheese to amp up the smoky or spicy flavors.
- Stir in roasted corn or chopped red bell peppers for a touch of sweetness and color.
How to Make Jalapeño Popper Macaroni and Cheese
Ingredients You’ll Need:
For The Pasta & Cheese Sauce:
- 8 oz elbow macaroni
- 2 cups shredded sharp cheddar cheese
- 1 cup shredded Monterey Jack cheese
- 4 oz cream cheese, softened
- 2 cups whole milk
- 2 tbsp butter
- 2 tbsp all-purpose flour
- 2-3 fresh jalapeños, sliced (remove seeds for less heat)
- Salt and pepper to taste
For The Topping:
- 1/2 cup panko breadcrumbs
- 1/4 cup cooked and crumbled bacon (optional)
How Much Time Will You Need?
This recipe takes about 10 minutes to prepare, plus 15-20 minutes to bake. Plan for around 30 minutes total from start to finish, making it a quick and satisfying meal option.
Step-by-Step Instructions:
1. Make the Pasta:
Preheat your oven to 350°F (175°C). Cook the elbow macaroni according to the package directions until just tender (al dente). Drain well and set aside.
2. Prepare the Cheese Sauce:
In a large saucepan, melt the butter over medium heat. Stir in the flour and cook for 1-2 minutes until it turns lightly golden, creating a thick paste called a roux. Slowly whisk in the milk, stirring constantly until the mixture thickens, about 4-5 minutes. Turn the heat down to low and add the softened cream cheese. Stir until fully melted and smooth. Add the shredded cheddar and Monterey Jack cheeses, stirring until melted and creamy. Mix in the cooked macaroni and sliced jalapeños, saving some jalapeño slices for garnish. Season with salt and pepper to your taste.
3. Bake and Serve:
Transfer the macaroni and cheese mixture to a cast-iron skillet or baking dish. In a small bowl, combine the panko breadcrumbs and crumbled bacon (if using) and sprinkle over the top evenly. Bake for 15-20 minutes or until the top is golden brown and the cheese is bubbling. Remove from oven, garnish with reserved jalapeño slices, and serve warm. Enjoy your creamy, spicy jalapeño popper macaroni and cheese!
Can I Use Frozen Jalapeños for This Recipe?
Yes, you can use frozen jalapeños, but be sure to thaw and drain them well before adding to avoid extra moisture in the mac and cheese.
How Do I Make This Dish Less Spicy?
To reduce the heat, remove the jalapeño seeds and membranes before slicing. You can also use fewer jalapeños or substitute with milder peppers like poblano or green bell pepper.
Can I Make Jalapeño Popper Mac and Cheese Ahead of Time?
Yes! Prepare everything up to assembling in the baking dish, cover it tightly, and refrigerate for up to 24 hours. When ready, bake as directed, adding a few extra minutes if baking straight from the fridge.
How Should I Store Leftovers?
Store any leftovers in an airtight container in the fridge for up to 3 days. Reheat gently in the oven or microwave, adding a splash of milk if needed to keep it creamy.



